PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1984_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 510aa    MW: 54197.6 Da    PI: 5.0233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1984_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11326368754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  RrC1984_p3 326 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 368
                 79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16322389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9325368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-13326372No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15326381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.19E-7439499No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MVLDGNGGGV WLGGGGGGGG GERVQEEENE EASWGRNQED GGGGGSLSHQ FKPMLESGGG  60
DWFSSNQPHP QDLQMLQSQQ DFRFLGGFGF NPNDNLLLLQ HSMDSSSSCS PSQAFTLDPS  120
QSSFLAAAAN NKSCLLNVPS STNPFDNAFE FGSDSGFLGQ IQAPVSMGFG SLTQLGSSVP  180
DFLSARSLLP PENNNTTPLC GGGGGGGFTP LELEGFGSPA SFVGSRAKVL KPLEVLASSG  240
AQPTLFQKRA AMRQSSGSKM GNSESSGMMR RLSDDGEMDE TGIEVSGLNY ESDELNESGK  300
ASESVQNGGG GGGKGKKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD  360
AIDYLKELLQ RINDLHNELE STPNGSLPPT SSSFHPLTPT PQTLSCRVKE ELCPSSLPSP  420
KGQQARVEVR LREGRAVNIH MFCGRRPGLL LATMKALDNL GLDVQQAVIS CFNGFALDVF  480
RAEQCQEGQE ILPDQIKAVL FDTAGYAGMI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315333KKKGMPAKNLMAERRRRKK
2327334ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8572080.0HQ857208.2 Brassica juncea inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644714.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_013662974.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE20.0ICE1_ARATH; Transcription factor ICE1
TrEMBLF6GPI50.0F6GPI5_BRARC; ICE1
STRINGBra025226.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.40.0bHLH family protein